People

Taewoo Ryu

Research Scientists

Group Leader

The APEC Climate Center (APCC)

Busan, Republic of Korea

www.apcc21.org

Research Interests

My research theme is identifying transcriptional regulatory networks in marine organisms, especially in Red Sea coral and sponge. In particular, Iā€™m interested in elucidating spatiotemporal regulatory networks during development using genome-scale high-throughput data and integrative systems biology approaches.

Selected Publications

Journals


  • Ryu T, Veilleux HD, Donelson JM, van Herwerden L, Seridi L, Ghosheh Y, Berumen ML, Leggat W, Munday PL and Ravasi T. Mechanisms of transgenerational acclimation to a warming ocean. Nature Climate Change 2015. doi:10.1038/nclimate2724.
  • Young-Il Kim, Taewoo Ryu, Judong Lee, Young-Shin Heo, Joohong Ahnn, Seung-Jae Lee, and OokJoon Yoo. A genetic screen for modifiers of Drosophila caspase Dcp-1 reveals caspase involvement in autophagy and novel caspase-related genes. BMC Cell Biol, 2010, 11:9
  • Tae
  • woo Ryu, Sejoon Lee, Cheol-Goo Hur, and Doheon Lee. A web-based tool for transcriptional regulatory site identification using a conserved virtual chromosome. BMB Rep, 2009, Vol. 42, No. 12. p823-828.
  • H
  • ojung Nam, Taewoo Ryu, KiYoung Lee, Sangwoo Kim, and Doheon Lee. Computational identification of significantly regulated metabolic reactions by integration of data on enzyme activity and gene expression. BMB Rep, 2008, Vol. 41, No. 8. p609-614.
  • 83
  • Taewoo Ryu, Juhyun Jung, Sunjae Lee, Ho Jung Nam, Sun Woo Hong, Jae Wook Yoo, Dong-ki Lee, and Doheon Lee. bZIPDB : A database of regulatory information for human bZIP transcription factors. BMC Genomics, 2007, 8:136.
  • woo Ryu, Younghoon Kim, Dae-Won Kim, and Doheon Lee. Computational identification of combinatorial regulation and transcription factor binding sites. Biotechnol Bioeng, 2007, Vol. 97, No. 6. p1594-1602.

 

Conference

  • Fer
  • as F. Lafi, Taewoo Ryu, Lucas Moitinho-Silva, Loqmane Seridi, Emily C. Giles, Christian R Voolstra, Ute Hentschel, and Timothy Ravasi. Comparative transcriptomics of the marine sponges, Stylissa carteri and Xestospongia testudinaria from the central Red Sea. 12th International Coral Reef Symposium (ICRS), 2012.
  • Manuel Aranda, Adrian Carr, Lucas Silva, Till Bayer, Taewoo Ryu, Emily Giles, Ute Hentschel, Gos Micklem, Timothy Ravasi, and Christian R Voolstra. Coral Reef Genomics in the Red Sea. 12th International Coral Reef Symposium (ICRS), 201
  • 2.
  • Taewoo Ryu, Loqmane Seridi, Emily Giles, Lucas Moitinho-Silva, Ute Hentschel, Christian R. Voolstra, and Timothy Ravasi. Integrative approaches shed light on corals and sponges as emerging model organisms. 12th International Coral Reef Symposium (ICRS), 2012.
  • Taewoo Ryu , Harris Mavromatis, Till Bayer, Chris Voolstra, and Timothy Ravasi. Unexpected complexity of the reef-building coral Acropora millepora transcritptional network. euro Internaltional Society for Reef studies (ISRS), 2
  • 010.
  • .
  • Sunjae Lee, Taewoo Ryu, Kwang Hyung Lee, and Doheon Lee. Protein interaction inference of bZIP transcription factors using Bayesian network. KSBI annual conference,
  • 2006.
  • Su
  • n-Woo Hong, Taewoo Ryu, Doheon Lee, and Dong-ki Lee. Toward the understanding of human NRSR and bZIP regulome using siRNA and DNA microarray. KSBMB annual meeting, 2006
  • A Reum Han, Dong-Soo Kahng, Taewoo Ryu, Hyun S. Moon, Kwang Hyung Lee, and Doheon Lee. Extraction of developmentally important genes from microarray data. JACIII 9(3): 277-281,2005
  • Dong-Soo Kahng, Taewoo Ryu, A Reum Han, Hyun S. Moon, Kwang H. Lee and Doheon Lee. Extraction of developmentally important genes from microarray data. SCIS and ISIS conference, 2004.
  • OhSung Na, Taewoo Ryu, Sun-Woo Hong, Doheon Lee, and Dong-ki Lee. Identification of the target genes of DREAM using DNA microarray. The 8th Asian conference on transcription, 2004.

Education

2003ā€“2008 Doctor, Department of Bio and Brain Engineering, KAIST, Korea
2001ā€“2003 Master, Department of Biological Sciences, KAIST, Korea
1997ā€“2001 Bachelor, Department of Biological Sciences, KAIST, Korea